PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7024_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 332aa    MW: 36422.1 Da    PI: 6.1153
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7024_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.8e-1385136155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 ++++h  +Er+RR+++N+ +  Lr+l+P     + k+ + a+i   +veYI++Lq
  RrC7024_p1  85 QKMSHVTVERNRRKQMNEHLTVLRSLMPCF---YVKRGDQASIIGGVVEYISELQ 136
                 6899*************************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.4E-1383139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-1783159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.93984135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.47E-1284140No hitNo description
PfamPF000101.7E-1085136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-1190141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MPDFLEECEF ADTSLAEDDL FAILESLEGA GEISPTAAST PYKDGTTSSK ELVTDPNCET  60
SSPKKKRKRL ETEKEDEEEE ENTQQKMSHV TVERNRRKQM NEHLTVLRSL MPCFYVKRGD  120
QASIIGGVVE YISELQQVLQ SLEAKKQRKT YAEVLSPRLV PSPRPSPPVL SPRKPPLSPR  180
INHHHLLLPP ISPRTPQPTS PYLAYPPQLP LIPQPPHRSY SSLAGGSSLG DPPPYSPASS  240
SSSPSVSSNR ESSVVNELVA NSKSASADVE VKFSGANVLL KTTSHKIPGQ VLKIISALED  300
LSLEILQVNI NTVDETMLNS FTIKVGSNNH PN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16269PKKKRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324460.0AC232446.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB006G23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132495.10.0PREDICTED: transcription factor SPEECHLESS-like
RefseqXP_009132496.10.0PREDICTED: transcription factor SPEECHLESS-like
SwissprotQ700C71e-152SPCH_ARATH; Transcription factor SPEECHLESS
TrEMBLM4EJX10.0M4EJX1_BRARP; Uncharacterized protein
STRINGBra029088.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78952740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.11e-126bHLH family protein